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measuring varying frequency with 9401

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I need to measure a varying frequency with a 9401 in 9178 chassis.  I am using an Express VI.  I have the input connected to the 9401 terminal and can read counts just fine expect that the counts per second vary.  I compared this to a scope and see that the pulse width varies and thus my frequency varies.  When I attempt to measure frequency, I get errors that no data was measured.  I also see the note in the Express VI to connect the input to PFI0.  This I do not understand.  Can someone help me?


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